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<head><title>R: Plot Multiple Sequence Alignment using 'ggplot2'</title>
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<h1> Plot Multiple Sequence Alignment using 'ggplot2'
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</div><h2>Documentation for package &lsquo;ggmsa&rsquo; version 0.0.4</h2>

<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
<li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li>
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<h2>Help Pages</h2>


<table width="100%">
<tr><td style="width: 25%;"><a href="available_colors.html">available_colors</a></td>
<td>List Color Schemes currently available</td></tr>
<tr><td style="width: 25%;"><a href="available_fonts.html">available_fonts</a></td>
<td>List Font Families currently available</td></tr>
<tr><td style="width: 25%;"><a href="available_msa.html">available_msa</a></td>
<td>List MSA objects currently available</td></tr>
<tr><td style="width: 25%;"><a href="color_Clustal.html">color_Clustal</a></td>
<td>A color scheme of Culstal.This function is a algorithm to assign colors for Multiple Sequence.</td></tr>
<tr><td style="width: 25%;"><a href="facet_msa.html">facet_msa</a></td>
<td>segment MSA</td></tr>
<tr><td style="width: 25%;"><a href="geom_asterisk.html">geom_asterisk</a></td>
<td>a ggplot2 layer of star as a polygon</td></tr>
<tr><td style="width: 25%;"><a href="geom_GC.html">geom_GC</a></td>
<td>geom_GC</td></tr>
<tr><td style="width: 25%;"><a href="geom_msa.html">geom_msa</a></td>
<td>geom_msa</td></tr>
<tr><td style="width: 25%;"><a href="geom_seed.html">geom_seed</a></td>
<td>geom_seed</td></tr>
<tr><td style="width: 25%;"><a href="geom_seqlogo.html">geom_seqlogo</a></td>
<td>geom_seqlogo</td></tr>
<tr><td style="width: 25%;"><a href="ggmotif.html">ggmotif</a></td>
<td>ggmotif</td></tr>
<tr><td style="width: 25%;"><a href="ggmsa.html">ggmsa</a></td>
<td>ggmsa</td></tr>
<tr><td style="width: 25%;"><a href="tidy_msa.html">tidy_msa</a></td>
<td>tidy_msa</td></tr>
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